SNP Profiles matching LCT EEN 90

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 Key

 1234567891011121314
_Input profile
CCGGCCTTCCTTGGCTCCTTGGCCAATT
1._LCT_EEN_90
CCGGCCTTCCTTGGCTCCTTGGCCAATT
2._LCT_EEN_90
CCGGCCTTCCTTGGCTCCTTGGCCAATT
3._LCT_EEN_90
CCGGCCTTCCTTGGCTCCTTGGCCAATT
4._LCT_EEN_90
CCGGCCTTCCTTGGCTCCTTGGCCAATT
5._LCT_EEN_90
CCGGCCTTCCTTGGCTCCTTGGCCAATT
6._LCT_EEN_90
CCGGCCTTCCTTGGCTCCTTGGCCAATT
7._LCT_EEN_90
CCGGCCTTCCTTGGCTCCTTGGCCAATT
8._LCT_EEN_90
CCGGCCTTCCTTGGCTCCTTGGCCAATT
9._LCT_EEN_90
CCGGCCTTCCTTGGCTCCTTGGCCAATT
10._GC-08-089-2-12
CCGGCCTTCCTTGGCTCCTTGGCCAATT
11._GC-08-089-2-12
CCGGCCTTCCTTGGCTCCTTGGCCAATT
12._GC-08-089-2-12
CCGGCCTTCCTTGGCTCCTTGGCCAATT
13._GC-08-089-2-12
CCGGCCTTCCTTGGCTCCTTGGCCAATT
14._GC-08-089-2-12
CCGGCCTTCCTTGGCTCCTTGGCCAATT
15._GC-08-089-2-12
CCGGCCTTCCTTGGCTCCTTGGCCAATT
16._GC-08-089-2-12
CCGGCCTTCCTTGGCTCCTTGGCCAATT
17._GC-08-089-2-12
CCGGCCTTCCTTGGCTCCTTGGCCAATT
18._GC-08-089-2-12
CCGGCCTTCCTTGGCTCCTTGGCCAATT
19._GC-08-089-2-12
CCGGCCTTCCTTGGCTCCTTGGCCAATT
20._POUND_10
CCGGCCTTCCTTGGCTCCTTGGCCAATT
21._POUND_10
CCGGCCTTCCTTGGCTCCTTGGCCAATT
22._POUND_10
CCGGCCTTCCTTGGCTCCTTGGCCAATT
23._GC-05-069-2-20
CCGGCCTTCCTTGGCTCCTTGGCCAATT
24._GC-05-069-2-20
CCGGCCTTCCTTGGCTCCTTGGCCAATT
25._GC-05-069-2-20
CCGGCCTTCCTTGGCTCCTTGGCCAATT
26._LCT_EEN_90
CCGGCCTTCCTTGGCT-TTGGCCAATT
27._LCT_EEN_90
CCGGCCTTCCTTGGCT_TTGGCCAATT
28._UF_712
CCGGCCTTCCTTGGCCCCTTGGCCAATT
29._UF_712
CCGGCCTTCCTTGGCCCCTTGGCCAATT
30._UF_712
CCGGCCTTCCTTGGCCCCTTGGCCAATT
31._GC-01-089-5-06
CCGGCCTTCCTTGGCCCCTTGGCCAATT
32._GC-01-089-5-06
CCGGCCTTCCTTGGCCCCTTGGCCAATT
33._GC-01-089-5-06
CCGGCCTTCCTTGGCCCCTTGGCCAATT
34._UF_712
CCGG_TTCCTTGGCCCCTTGGCCAATT
35._GC-01-089-5-06
CCGG_TTCCTTGGCCCCTTGGCCAATT
36._RUQ_1638
_GGCCTT__GG____CCAA_
37._RUQ_1683
_GGCCTT__GG____CCAA_
38._RUQ_1638
CCGGCCTTCCTTGGCCCCATGGCCAATT
39._RUQ_1638
CCGGCCTTCCTTGGCCCCATGGCCAATT
40._UF_712
CCGGCCTTCCTTGGCCCCATGGCCAATT
41._LCT_EEN_267
CCGGCCTTCCTTGGTT-ATGGCCAATT
 1516171819202122232425262728
_Input profile
TTGGCCTTGGGGAACTCCGGGGCCACGG
1._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
2._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
3._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
4._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
5._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
6._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
7._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
8._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
9._LCT_EEN_90
TTGGCCTTGGGGAACTCCGGGGCCACGG
10._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
11._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
12._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
13._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
14._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
15._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
16._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
17._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
18._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
19._GC-08-089-2-12
TTGGCCTTGGGGAACTCCGGGGCCACGG
20._POUND_10
TTGGCCTTGGGGAACTCCGGGGCCACGG
21._POUND_10
TTGGCCTTGGGGAACTCCGGGGCCACGG
22._POUND_10
TTGGCCTTGGGGAACTCCGGGGCCACGG
23._GC-05-069-2-20
TTGGCCTTGGGGAACTCCGGGGCCACGG
24._GC-05-069-2-20
TTGGCCTTGGGGAACTCCGGGGCCACGG
25._GC-05-069-2-20
TTGGCCTTGGGGAACTCCGGGGCCACGG
26._LCT_EEN_90
TTGGCCTTGGGGGGCTCCGGGGCCACGG
27._LCT_EEN_90
TTGGCCTTGGGGGGCTCCGGGGCCACGG
28._UF_712
TTGGCCTTGGGGAACTCCGGGGCCAAGG
29._UF_712
TTGGCCTTGGGGAACTCCGGGGCCAAGG
30._UF_712
TTGGCCTTGGGGAACTCCGGGGCCAAGG
31._GC-01-089-5-06
TTGGCCTTGGGGAACTCCGGGGCCAAGG
32._GC-01-089-5-06
TTGGCCTTGGGGAACTCCGGGGCCAAGG
33._GC-01-089-5-06
TTGGCCTTGGGGAACTCCGGGGCCAAGG
34._UF_712
TTGGCCTTGGGGAACTCCGGGGCCAAGG
35._GC-01-089-5-06
TTGGCCTTGGGGAACTCCGGGGCCAAGG
36._RUQ_1638
___TTGGGG_CTCCGGGGCCAAGG
37._RUQ_1683
___TTGGGG_CTCCGGGGCCAAGG
38._RUQ_1638
TTGGCCTTGGGGGGCTCCGGGGCCAAGG
39._RUQ_1638
TTGGCCTTGGGGGGCTCCGGGGCCAAGG
40._UF_712
TT_CCTTGGGGGGCTCCGGGGCCAAGG
41._LCT_EEN_267
TTCGCTTTCGGGAGCTCCGGGGCCACGG
 2930313233343536373839   
_Input profile
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
1._LCT_EEN_90
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
2._LCT_EEN_90
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
3._LCT_EEN_90
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
4._LCT_EEN_90
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
5._LCT_EEN_90
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
6._LCT_EEN_90
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
7._LCT_EEN_90
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
8._LCT_EEN_90
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
9._LCT_EEN_90
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
10._GC-08-089-2-12
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
11._GC-08-089-2-12
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
12._GC-08-089-2-12
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
13._GC-08-089-2-12
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
14._GC-08-089-2-12
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
15._GC-08-089-2-12
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
16._GC-08-089-2-12
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
17._GC-08-089-2-12
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
18._GC-08-089-2-12
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
19._GC-08-089-2-12
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
20._POUND_10
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
21._POUND_10
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
22._POUND_10
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
23._GC-05-069-2-20
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
24._GC-05-069-2-20
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
25._GC-05-069-2-20
AATTCCAAGGCCTTGGCCAACCX_XX_XX_X
26._LCT_EEN_90
AATTCCAA-CCTTGGCCAACCX_XX_XX_X
27._LCT_EEN_90
AATTCCAA_CCTTGGCCAACCX_XX_XX_X
28._UF_712
AATTCCAACCCCTTGGCCAACCX_XX_XX_X
29._UF_712
AATTCCAACCCCTTGGCCAACCX_XX_XX_X
30._UF_712
AATTCCAACCCCTTGGCCAACCX_XX_XX_X
31._GC-01-089-5-06
AATTCCAACCCCTTGGCCAACCX_XX_XX_X
32._GC-01-089-5-06
AATTCCAACCCCTTGGCCAACCX_XX_XX_X
33._GC-01-089-5-06
AATTCCAACCCCTTGGCCAACCX_XX_XX_X
34._UF_712
AATTCCAACCCCTTGGCCAACCX_XX_XX_X
35._GC-01-089-5-06
AATTCCAACCCCTTGGCCAACCX_XX_XX_X
36._RUQ_1638
_TTCCAACCCCTTGGCC__X_XX_XX_X
37._RUQ_1683
_TTCCAACCCCTTGGCC__X_XX_XX_X
38._RUQ_1638
AATTCCAACCCCTTGGCCAACCX_XX_XX_X
39._RUQ_1638
AATTCCAACCCCTTGGCCAACCX_XX_XX_X
40._UF_712
AATTCCAACCCCTTGGCCAACCX_XX_XX_X
41._LCT_EEN_267
AATTCCAA-CCTTGGACAACCX_XX_XX_X

Input profile: LCT_EEN_90

 
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Mars Center for Cocoa Science, Brazil
Location: 8212 4 > FP
 Dapeng Zhang, 2016

1._LCT_EEN_90

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 3 > FP
 Dapeng Zhang, 2016

2._LCT_EEN_90

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 2 > FP
 Dapeng Zhang, 2016

3._LCT_EEN_90

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 1 > FP
 Dapeng Zhang, 2016

4._LCT_EEN_90

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 10
 Dapeng Zhang, 2016

5._LCT_EEN_90

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 9
 Dapeng Zhang, 2016

6._LCT_EEN_90

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 8
 Dapeng Zhang, 2016

7._LCT_EEN_90

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 7
 Dapeng Zhang, 2016

8._LCT_EEN_90

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 6
 Dapeng Zhang, 2016

9._LCT_EEN_90

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

10._LCT_EEN_90 GC-08-089-2-12

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._LCT_EEN_90 GC-08-089-2-12

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

12._LCT_EEN_90 GC-08-089-2-12

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

13._LCT_EEN_90 GC-08-089-2-12

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

14._LCT_EEN_90 GC-08-089-2-12

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._LCT_EEN_90 GC-08-089-2-12

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._LCT_EEN_90 GC-08-089-2-12

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._LCT_EEN_90 GC-08-089-2-12

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

18._LCT_EEN_90 GC-08-089-2-12

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._LCT_EEN_90 GC-08-089-2-12

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._POUND_10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5220 3
 Dapeng Zhang, 2016

21._POUND_10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5220 1 > FP
 Dapeng Zhang, 2016

22._POUND_10

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5220 4 > FP
 Dapeng Zhang, 2016

23._POUND_10 GC-05-069-2-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

24._POUND_10 GC-05-069-2-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

25._POUND_10 GC-05-069-2-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

26._LCT_EEN_90

97.3 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 143 T3
 Dapeng Zhang, 2014

27._LCT_EEN_90

97.3 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 143 T3
 Dapeng Zhang, 2016

28._UF_712

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

29._UF_712

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 2
 Dapeng Zhang, 2016

30._UF_712

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 4
 Dapeng Zhang, 2016

31._UF_712 GC-01-089-5-06

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

32._UF_712 GC-01-089-5-06

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

33._UF_712 GC-01-089-5-06

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

34._UF_712

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 3
 Dapeng Zhang, 2016

35._UF_712 GC-01-089-5-06

94.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

36._UF_712 RUQ_1638

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

37._UF_712 RUQ_1683

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

38._UF_712 RUQ_1638

91 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

39._UF_712 RUQ_1638

91 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

40._UF_712

90.8 %
38 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

41._LCT_EEN_267

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25